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Elucidating the mechanism of protein folding is an intriguing and
challenging task. We have proposed a novel parameter, long-range order
(LRO) for a protein from the knowledge of long-range contacts (contacts
between two residues that are close in space and far in the sequence)
in protein structure. A simple statistical method has been developed
for predicting the folding rate of two-state proteins using LRO and
we found an excellent agreement between the predicted and experimental
protein folding rates. Further, we found that the conformational properties,
short and medium-range energy and long-range contacts are the major
determinants for transition state structures of two-state proteins.
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the correlation coefficient obtained between long-range contacts
and folding rate of proteins, and the minimum limit to define
long-range contacts. |
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| Relational Information |
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AIST Today Vol. 2, No. 12 (2002) 18
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